Looks like you are making great progress. Everyone suggested the step up in the cam as the factory one is set for smog. Mine seems peppy, but its not going to win any races.
The Dana 20 was a direct bolt on for my Caddy TH400 also. If you want to drive it right away. I set mine up to use the stock shafts.
Glad to help, just let me know... \m/
Oh ya, and I have 1/2" between me heater box and valve cover, and Hydroboost is in right-side-up, with no bodylift. Although I only have about 4" between the oil pan and axle...